PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG385500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 525aa    MW: 55249.3 Da    PI: 9.6199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG385500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.9e-13333378655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  Pavir.2NG385500.1.p 333 SIAERVRRTKISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 378
                          689*********************7....467*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.212327377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-15330386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.96E-13331382No hitNo description
Gene3DG3DSA:4.10.280.109.8E-15332385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9333378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-13333383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MYGSPVPKDL NLPAAQPQPT RTPPQMSSPG LLRYRSAPST LLGEVMCGDH DFHEAAAAGH  60
GPAHAAADNV LARFLAGHHA DIPDCKPPRP AAAAAHFMED AASMATPQQQ QQLMYQSQQQ  120
MAAMEGLYRN VSSGGTEQAV AAGASGGAVL RQSSSPAGFL NHLNMDNGYG SMLRAGMAGG  180
FRNGVVSDAR LKGQLSFSSR QGSVMSQISE VGSEELDGGG SPEAAGSNGA ARGYSGIPGY  240
PMGGASGAWT DEQSPTSSGA KRPRDSGPPP QNGQQQPPPP LAPQLSLPGG TGRNGVGKQS  300
SAETAAIEKF LQFQDAVPCK IRAKRGCATH PRSIAERVRR TKISERIRKL QELVPNMEKQ  360
TNTADMLDLA VDYIKDLQKQ VKDASVEQIC PLVDGRGNFD EAYPTAPPET KSIQAVFLLP  420
VGISILNWFI KRHCSSEFRF AHGGLSFVPG AERRPRQLHL LRRQAAAEPV RQLKQPPPLT  480
ARCGAARPQG LAGGEASAPA PAARSSSFGP SPTGVLLVSV YVRR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0836840.0BT083684.2 Zea mays full-length cDNA clone ZM_BFb0028K22 mRNA, complete cds.
GenBankEU9699620.0EU969962.1 Zea mays clone 337883 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957179.10.0PREDICTED: transcription factor bHLH130-like isoform X2
TrEMBLK3ZU000.0K3ZU00_SETIT; Uncharacterized protein
STRINGSi029614m0.0(Setaria italica)
STRINGGRMZM2G085467_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-41bHLH family protein